class: center, middle, inverse, title-slide # Evolution of the water quality reporting tool ### <a href="mailto:marcusb@sccwrp.org">Dr. Marcus Beck</a> <span class="math inline">•</span> <a href="https://twitter.com/fawda123">@fawda123</a> <span class="math inline">•</span> <a href="https://twitter.com/hashtag/TampaBayOpenSci?src=hashtag_click">#TampaBayOpensci</a> ### Southern California Coastal Water Research Project ### 9/5/2019 --- class: middle, center, inverse # How did we apply open science principles to the water quality reporting tool? --- class: middle, center, inverse # Chapter 1: A history lesson --- class: middle, center <img src="figure/tbepreport.png" width="70%" /> --- class: middle, center, inverse # Buried deep in the appendix... some clues! --- class: middle, center ## Defining magnitude and duration of water quality exceedances <img src="figure/outints.png" width="90%" /> --- class: middle, center ## Combining different water quality indicators <img src="figure/outmats.PNG" width="90%" /> --- class: middle, center ## Developing a management narrative <img src="figure/cats.PNG" width="90%" /> --- class: middle, center, inverse # Chapter 2: Entering the modern age --- class: middle, center <img src="figure/epchcftp.PNG" width="90%" /> --- class: middle, center <img src="figure/reportall.png" width="100%" /> --- class: middle, center ### A primitive langauge... <img src="figure/sascode.PNG" width="70%" /> --- class: middle, center, inverse # Chapter 3: Ed goes to California --- class: middle, center <img src="figure/nceasoss.PNG" width="100%" /> --- class: middle, center #### Dabbling in reproducibility <img src="figure/initialrmd.PNG" width="80%" /> --- class: middle, center, inverse # Chapter 4: Let's try open science --- class: middle, center, inverse # The first three chapters gave us the raw materials, now we can try better science in less time! --- class: middle, center ## Build an R package! <img src="figure/packagestructure.png" width="70%" /> ###### http://r-pkgs.had.co.nz/package.html --- class: middle, center ## The tbeptools package <img src="figure/tbeptoolshome.PNG" width="100%" /> --- class: middle, center ## Full documentation <img src="figure/examplehelp.PNG" width="90%" /> --- class: middle, center ## Vignettes (how to in plain language) <img src="figure/vignetteexample.PNG" width="80%" /> --- class: middle, center ## Interactive dashboards <img src="figure/dashboard.PNG" width="100%" /> ##### https://shiny.tbeptech.org/tbeptools/inst/wq-dash/wq-dash.Rmd --- class: middle, center, inverse # These are prototypes, this is what we can do for all CCMP indicators!