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Get all raw metrics for Tampa Bay Nekton Index

Source: R/anlz_tbnimet.R
anlz_tbnimet.Rd

Get all raw metrics for Tampa Bay Nekton Index

Usage

anlz_tbnimet(fimdata, all = FALSE)

Arguments

fimdata

data.frame formatted from read_importfim

all

logical indicating if only TBNI metrics are returned (default), otherwise all are calcualted

Value

A data frame of raw metrics in wide fomat. If all = TRUE, all metrics are returned, otherwise only NumTaxa, BenthicTaxa, TaxaSelect, NumGuilds, and Shannon are returned.

Details

All raw metrics are returned in addition to those required for the TBNI. Each row shows metric values for a station, year, and month where fish catch data were available.

Examples

anlz_tbnimet(fimdata)
#> # A tibble: 7,445 × 10
#>    Reference  Year Month Season bay_segment NumTaxa Shannon TaxaSelect NumGuilds
#>    <chr>     <dbl> <dbl> <chr>  <chr>         <dbl>   <dbl>      <dbl>     <dbl>
#>  1 TBM19980…  1998     1 Winter OTB               2   0.362          0         2
#>  2 TBM19980…  1998     1 Winter OTB               1   0              1         1
#>  3 TBM19980…  1998     1 Winter OTB               0   0              0         0
#>  4 TBM19980…  1998     1 Winter OTB               2   0.693          0         1
#>  5 TBM19980…  1998     1 Winter MTB               4   1.16           1         2
#>  6 TBM19980…  1998     1 Winter MTB               2   0.500          1         1
#>  7 TBM19980…  1998     1 Winter MTB               5   0.426          2         3
#>  8 TBM19980…  1998     1 Winter OTB               0   0              0         0
#>  9 TBM19980…  1998     1 Winter HB                4   0.794          1         4
#> 10 TBM19980…  1998     1 Winter HB                1   0              0         1
#> # ℹ 7,435 more rows
#> # ℹ 1 more variable: BenthicTaxa <dbl>