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Format phytoplankton data

Source: R/read_formphyto.R
read_formphyto.Rd

Format phytoplankton data

Usage

read_formphyto(datin)

Arguments

datin

input data.frame loaded from read_importphyto

Value

A formatted data.frame with phytoplankton count data

Details

Only seven taxonomic groups are summarized. Pyrodinium bahamense, Karenia brevis, Tripos hircus, Pseudo-nitzschia sp., and Pseudo-nitzschia pungens are retained at the species level. Bacillariophyta and Cyanobacteria are retained at the phylum level. All other taxa are grouped into an "other" category.

See also

read_importphyto

Examples

if (FALSE) {
# file path
xlsx <- '~/Desktop/phyto_data.xlsx'

# load and assign to object
phytodata <- read_importphyto(xlsx)
}