Load local water quality file for Fecal Indicator Bacteria (FIB)

Load local water quality file for Fecal Indicator Bacteria (FIB)

Usage

read_importfib(xlsx, download_latest = FALSE, na = c("", "NULL"), all = TRUE)

Arguments

xlsx

chr string path for local excel file, to overwrite if not current

download_latest

logical passed to read_dlcurrent to download raw data and compare with existing in xlsx if available

na

chr vector of strings to interpret as NA, passed to read_xlsx

all

logical indicating if all stations with FIB data are returned, default is TRUE, see details

Value

A data.frame of formatted FIB data.

Details

Loads the "RWMDataSpreadsheet" worksheet from the file located at xlsx. The file is downloaded from https://epcbocc.sharepoint.com/:x:/s/Share/EYXZ5t16UlFGk1rzIU91VogBa8U37lh8z_Hftf2KJISSHg?e=8r1SUL&download=1. The files can be viewed at https://epcbocc.sharepoint.com/:f:/s/Share/EiypSSYdsEFCi84Sv_6-t7kBUYaXiIqN0B1n2w57Z_V3kQ?e=NdZQcU.

Returns FIB data including E. coli, Enterococcus, Fecal Coliform, and Total Coliform concentrations and waterbody class (freshwater as 1 or 3F, marine as 2 or 3M) for stations and sample dates, function is used internally within read_importfib

Values are returned for E. coli (ecoli), Enterococcus (entero), Fecal Coliform (fcolif), and Total Coliform (totcol). Values shown are # of colonies per 100 mL of water (#/100mL). Qualifier columns for each are also returned with the _q suffix. Qualifier codes can be interpreted from the source spreadsheet.

Concentrations noted with < or > in the raw data are reported as is, with only the numeric value shown. Samples with this notation can be determined from the qualifier columns.

If all = FALSE, only stations with AreaName in the source data as Hillsborough River, Hillsborough River Tributary, Alafia River, Alafia River Tributary, Lake Thonotosassa, Lake Thonotosassa Tributary, and Lake Roberta.

See also

read_formfib

Examples

if (FALSE) { # \dontrun{
# file path
xlsx <- '~/Desktop/RWMDataSpreadsheet_ThroughCurrentReportMonth.xlsx'

# load and assign to object
fibdata <- read_importfib(xlsx, download_latest = T)

} # }