Map Enterococcus results by month, year, and location

Map Enterococcus results by month, year, and location

Usage

show_enteromap(
  fibdata,
  yrsel,
  mosel,
  areasel = NULL,
  wetdry = FALSE,
  precipdata = NULL,
  temporal_window = NULL,
  wet_threshold = NULL
)

Arguments

fibdata

data frame of Enterococcus sample data as returned by enterodata or anlz_fibwetdry

yrsel

optional numeric to filter data by year

mosel

optional numeric to filter data by month

areasel

optional character string to filter output by stations in the long_name column of enterodata, see details

wetdry

logical; if TRUE, incorporate wet/dry differences (this will result in a call to anlz_fibwetdry, in which case temporal_window and wet_threshold are required). If FALSE (default), do not differentiate between wet and dry samples.

precipdata

input data frame as returned by read_importrain. columns should be: station, date (yyyy-mm-dd), rain (in inches). The object catchprecip has this data from 1995-2023 for select Enterococcus stations. If NULL, defaults to catchprecip.

temporal_window

numeric; required if wetdry is TRUE. number of days precipitation should be summed over (1 = day of sample only; 2 = day of sample + day before; etc.)

wet_threshold

numeric; required if wetdry is TRUE. inches accumulated through the defined temporal window, above which a sample should be defined as being from a 'wet' time period

Value

A leaflet map for the selected year, month, and area showing stations and FIB concentration category

Details

Placing the mouse cursor over an item on the map will reveal additional information about a station.

See also

anlz_enteromap for details on the categories

Examples

show_enteromap(enterodata, yrsel = 2020, mosel = 9)


# wet/dry samples
show_enteromap(enterodata, yrsel = 2020, mosel = 9, wetdry = TRUE,
               temporal_window = 2, wet_threshold = 0.5)


# Old Tampa Bay only
show_enteromap(enterodata, yrsel = 2020, mosel = 9, areasel = "Old Tampa Bay")