Add contaminant totals to sediment data

Usage

anlz_sedimentaddtot(
  sedimentdata,
  yrrng = c(1993, 2022),
  bay_segment = c("HB", "OTB", "MTB", "LTB", "TCB", "MR", "BCB"),
  funding_proj = "TBEP",
  param = NULL,
  pelave = TRUE
)

Arguments

sedimentdata: input sediment data.frame as returned by read_importsediment
yrrng: numeric vector indicating min, max years to include, use single year for one year of data
bay_segment: chr string for the bay segment, one to many of "HB", "OTB", "MTB", "LTB", "TCB", "MR", "BCB"
funding_proj: chr string for the funding project, one to many of "TBEP" (default), "TBEP-Special", "Apollo Beach", "Janicki Contract", "Rivers", "Tidal Streams"
param: optional character string of a parameter to filter the results
pelave: logical indicating if output is used for anlz_sedimentpel

Value

A data.frame object similar to the input, but filtered by the arguments and contaminant totals added. Replicate samples are also removed.

Details

This function adds totals to the sedimentdata input for total PCBs, total DDT, total LMW PAH, total HMW PAH, and total PAH. Appropriate TEL/PEL values for the totals are also added.

Examples

anlz_sedimentaddtot(sedimentdata)
#> # A tibble: 62,667 × 24
#>    ProgramId ProgramName   FundingProject    yr AreaAbbr StationID StationNumber
#>        <int> <chr>         <chr>          <int> <chr>        <int> <chr>        
#>  1         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  2         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  3         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  4         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  5         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  6         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  7         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  8         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#>  9         4 Benthic Moni… TBEP            1993 HB            2463 93HB15       
#> 10         4 Benthic Moni… TBEP            1993 HB            2464 93HB16       
#> # ℹ 62,657 more rows
#> # ℹ 17 more variables: Latitude <dbl>, Longitude <dbl>, Replicate <chr>,
#> #   SedResultsType <chr>, Parameter <chr>, ValueAdjusted <dbl>, Units <chr>,
#> #   Qualifier <chr>, MDLnum <dbl>, PQLnum <dbl>, TEL <dbl>, PEL <dbl>,
#> #   BetweenTELPEL <chr>, ExceedsPEL <chr>, PELRatio <dbl>,
#> #   PreparationDate <chr>, AnalysisTimeMerge <chr>