Show annual averages of seagrass frequency occurrence by bay segments, year, and speciesSource:
Show annual averages of seagrass frequency occurrence by bay segments, year, and species
show_transectavespp( transectocc, bay_segment = c("OTB", "HB", "MTB", "LTB", "BCB"), yrrng = c(1998, 2022), species = c("Halodule", "Syringodium", "Thalassia", "Halophila", "Ruppia", "Caulerpa"), total = TRUE, alph = 1, family = NA, plotly = FALSE, asreact = FALSE, width = NULL, height = NULL, sppcol = NULL )
data frame returned by
chr string for the bay segment, one to many of "OTB", "HB", "MTB", "LTB", "BCB"
numeric indicating year ranges to evaluate
chr string of species to summarize, one to many of "Halodule", "Syringodium", "Thalassia", "Ruppia", "Halophila", "Caulerpa"
logical indicating if total frequency occurrence for all species is also returned, only applies if
asreact = FALSE
numeric indicating alpha value for score category colors
optional chr string indicating font family for text labels
logical if matrix is created using plotly
logical if a reactable table is returned instead of a plot
numeric for width of the plot in pixels, only applies of
plotly = TRUE
numeric for height of the plot in pixels, only applies of
plotly = TRUE
character vector of alternative colors to use for each species, must have length of six
asreact = F, a
plotly = T) object is returned showing trends over time by species for selected bay segments. If
asreact = T, a
reactable table showing results by year, segment, and species is returned.
The plot is a representation of figure 2 in Johansson, R. (2016) Seagrass Transect Monitoring in Tampa Bay: A Summary of Findings from 1997 through 2015, Technical report #08-16, Tampa Bay Estuary Program, St. Petersburg, Florida.
The table is a representation of table 2, p. 163 in Yarbro, L. A., and P. R. Carlson, Jr., eds. 2016. Seagrass Integrated Mapping and Monitoring Program: Mapping and Monitoring Report No. 2. Fish and Wildlife Research Institute Technical Report TR-17 version 2. vi + 281 p.