Plot frequency occurrence for a seagrass transect by time for all species

Usage

show_transectsum(
  transectocc,
  site,
  species = c("Halodule", "Syringodium", "Thalassia", "Halophila", "Ruppia", "Caulerpa",
    "Dapis", "Chaetomorpha"),
  yrrng = c(1998, 2024),
  abund = FALSE,
  sppcol = NULL
)

Arguments

transectocc: data frame returned by anlz_transectocc
site: chr string indicating site results to plot
species: chr string indicating which species to plot
yrrng: numeric indicating year ranges to evaluate
abund: logical indicating if abundance averages are plotted instead of frequency occurrence
sppcol: character vector of alternative colors to use for each species, must have length of six

Value

A plotly object

Details

This plot provides a quick visual assessment of how frequency occurrence or abundance for multiple species has changed over time at a selected transect. Drift or attached macroalgae (e.g., Caulerpa, Chaetomorpha) and cyanobacteria (Dapis) estimates may not be accurate prior to 2021.

Examples

if (FALSE) { # \dontrun{
transect <- read_transect()
} # }
transectocc <- anlz_transectocc(transect)
show_transectsum(transectocc, site = 'S3T10')