Tampa Bay Estuary Program (TBEP) GitHub Website

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Repositories

github.com/tbep-tech: GitHub organization
tbep-tech.github.io: files for this GitHub website
data-management-sop: TBEP data management SOP
tbep-refs: Comprehensive bibliography of TBEP publications, formatted here
tbeptools: R package with utility functions for reading, analyzing, and visualizing TBEP data. See the vignette for details on of the package.
tbeploads: R package for calculating load estimates to Tampa Bay. See the vignette for details on the package.
wqtrends: R package to assess water quality trends for long-term monitoring data in estuaries using Generalized Additive Models. See the vignette for details on the package.
peptools: R package with utility functions for reading, anlayzing, and visualizing Suffolk County monitoring data for the Peconic Estuary Program. See the vignette for details on the package.
github-backup: Repository used to create an archive of all repositories in the tbep-tech GitHub organization page and upload to Amazon S3 services on a weekly basis.

Reporting

Water Quality Report Card:
- Two-pager (source)
- Dashboard (source)
- Vignette
Tidal Creek Report Card
- Dashboard (source)
- Vignette
Tampa Bay Nekton Index
- Dashboard (source)
- Vignette
Seagrass Transect Training Data Dashboard
- Dashboard (source)
- Vignette
Seagrass Transect Dashboard
- Dashboard (source)
- Vignette
Tampa Bay Benthic Index
- Dashboard (source)
- Vignette
Tampa Bay Watershed Land Use
- Website (source)
ANEP congressional districts
- Dashboard (source)
Equity Plan Mapping
- Website (source)
Tampa Bay Valuation Dashboard
- Dashboard (source)
Old Tampa Bay Temperature Loggers
- Dashboard (source)
TBNMC Annual Compliance Assessments
- 2022 Website (Source)
- 2021 Website (Source)
- 2020 Website (Source)
Piney Point Environmental Monitoring Dashboard
- Dashboard (source)
- LOBO dashboard (source)
Piney Point Data Analysis
- Repository for analyzing Piney Point data (source)
Ft. DeSota Buoy Data, Pinellas County
- Data management and reporting repository, RESTORE project (source)
Seagrass Transect Water Atlas Content
- Graphics, tables, and downloads for seagrass transect data (source)
TBERF Oyster Restoration Project
- Materials for evaluating TBERF oyster restoration success Figures (source)
Scallop Search
- Materials for evaluation and mapping of the Tampa Bay Watch Great Scallop Search Dashboard (source)
Verified WBIDs
- Materials for evaluation of verified WBIDs in the Tampa Bay watershed Dashboard (source).
Load Estimates
- Materials for creating a unified workflow to synthesize and report on load estimates to Tampa Bay. All estimates were obtained from Janicki Environmental. Dashboard (source).

Presentations

ANEP Tech Transfer Workshop
- What is Open Science and Why Should the NEPs Care?, Oct. 29th, 2020 link
Bay-Delta IEP Data Science PWT
- Bringing open science to Tampa Bay: Reproducible workflows & dynamic documents, Feb. 11th, 2021 link
Board meetings
- Feb. 2020, 2019 water quality report card update: Management Board, Policy Board
- Nov. 2021, Piney Point Manuscript Update: link
- Feb. 2022, water quality report card and state of the bay update: link
- Feb. 2023, water quality report card and state of the bay update (MB): link
- Feb. 2023, water quality report card and state of the bay update (PB): link
- Feb. 2024, water quality report card and state of the bay update (MB): link
- Feb. 2024, water quality report card and state of the bay update (PB): link
CERF Seagrass CoP May 2021
- Providing interactive web access to long-term seagrass monitoring data with open science data analysis tools link
EPA N-STEPS Webinar Oct 2022
- Better nutrient management through open science: A collection of tales from California and Florida link
Habitat Restoration Consortium
- May 2020, HMPU workflow, updating, and web products: Reproducible tools for tracking progress link
Joint Aquatic Sciences Meetings 2022
- How the Tampa Bay Estuary Program Uses Open Science to Work Smarter, Not Harder, May 16th, 2022 link
National Water Quality Monitoring Conference 2023
- Using Open Science to Address Current and Future Threats to the Health of Tampa Bay, April 27th, 2023 link
NERRS Ecosystem Metabolism Webinar Aug 2020
- Methods and tools to measure ecosystem metabolism link
NMC meetings
- 2022 seagrass and water quality report results link
- 2022 provisional water quality report card link
- 2023 provisional water quality report card link
- 2024 provisional water quality report card link
- Hydrology and chlorophyll trends in Tampa Bay: Alternative modelling approaches link
Old Tampa Bay Working Group
- Jun 2020, Seagrass changes in OTB: Recent shifts and links to water quality link
Open Science Subcommittee
- Kickoff webinar, March 2nd, 2020 link
- Water Quality Dashboard review summary, May 6th, 2020 link
- OS updates, Oct 27th, 2020 link
- OS updates, Feb 2nd, 2021 link
- OS updates, May 4th, 2021 link
- OS updates, Aug 3rd, 2021 link
- OS updates, Feb 1st, 2022 link
- OS updates, May 3rd, 2022 link
- OS updates, Aug 2nd, 2022 link
- OS updates, Nov 1st, 2022 link
- OS updates, May 3rd, 2023 link
- OS updates, Aug 2nd, 2023 link
- OS updates, Nov 1st, 2023 link
- OS updates, May 23rd, 2024 link
- OS updates, Dec 10th, 2024 link
Open Science Workshop Sep 2019
- What is open science link
- NERRS OS applications link
- Evolution of open science for the water quality reporting tool link
- Overcoming open science challenges link
PEP Monitoring Collaborative Oct 2020
- Open source water quality reporting tools for the PEP Monitoring Collaborative link
- Open source reporting tools for the PEP Monitoring Collaborative: beach pathogens and dissolved oxygen link
Piney Point
- Piney Point Data and Analysis, June 15th, 2021 link
- Coordinated Monitoring of the Piney Point Wastewater Discharge into Tampa Bay: Data Synthesis and Reporting, Nov. 10, 2021 (CERF 2021) link
Pints of Science Oct 2023
- Science for the Masses: Using Open Science for Better Decisions to Restore and Protect Tampa Bay link
SBEP TAC meeting Feb 2020
- Open Science Data Discussion: Red Tide Impact and Response Assessment for Tampa and Sarasota Bay Region link
SWFL RAMP Meeting Jul 2020
- Open Science at TBEP: Tidal Tributaries Example link
SWFL Seagrass Working Group
- Tampa Bay Seagrass Changes: Exploring Trends from 2018 to 2020, Nov. 16, 2021 link
TAC meetings
- Jan 2024, water quality report card and state of the bay update link
- Oct 2023, Hot and fresh: Pervasive climate stressors of seagrass in Tampa Bay link
- Oct 2022, Revised Critical Coastal Habitat Assessment methodology link
- Jun 2022, Macroalgae trends in Tampa Bay: What we do(n’t) know link
- Jan 2022, RSPARROW Tools for End Users, Project Overview and Demo link
- Mar 2021, Open Science Indicator Products: Seagrass transect data and dashboard link
- Jun 2020, Tampa Bay Nekton Index: Open Science Integration link
- Jan 2020, Open Science Indicator Products: Water Quality and Tidal Tributaries link
USF Department of Integrative Biology
- Piney Point, red tide, and Twitter: A Tampa Bay story, March 30th, 2023 link
USF College of Marine Science
- How you can do better science in less time: Open science lessons from the Ocean Health Index to Tampa Bay, March 5th, 2021 link
Virtual Summit Jul 2020
- Bringing Open Science to Tampa Bay: Reproducible Workflows and Dynamic Documents link

Resources

TBEP Trainings

R Lessons & Tutorials

R eBooks/Courses

Git/GitHub

Site content curated by TBEP and partners

Contact mbeck@tbep.org with questions