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Repositories

  • github.com/tbep-tech: GitHub organization

  • build tbep-tech.github.io: files for this GitHub website

  • build data-management-sop: TBEP data management SOP

  • build tbep-refs: Comprehensive bibliography of TBEP publications, formatted here

  • R-CMD-check tbeptools: R package with utility functions for reading, analyzing, and visualizing TBEP data. See the vignette for a detailed overview of the package.

  • R-CMD-check wqtrends: R package to assess water quality trends for long-term monitoring data in estuaries using Generalized Additive Models. See the vignette for details on the package.

  • R-CMD-check peptools: R package with utility functions for reading, anlayzing, and visualizing Suffolk County monitoring data for the Peconic Estuary Program. See the vignette for details on the package.

  • archive github-backup: Repository used to create an archive of all repositories in the tbep-tech GitHub organization page and upload to Amazon S3 services on a weekly basis.

Reporting

  • Water Quality Report Card:
  • Tidal Creek Report Card
  • Tampa Bay Nekton Index
  • Seagrass Transect Training Data Dashboard
  • Seagrass Transect Dashboard
  • Tampa Bay Benthic Index
  • Tampa Bay Watershed Land Use
  • ANEP congressional districts
  • Water Quality Trends Manuscript
    • Materials for manuscript on water quality trends assessment using GAMs (source)
  • 2021 TBNMC Annual Compliance Assessment
  • 2020 TBNMC Annual Compliance Assessment
  • Piney Point Environmental Monitoring Dashboard
  • Piney Point Data Analysis
    • Repository for analyzing Piney Point data (source)
  • Ft. DeSota Buoy Data, Pinellas County
    • build Data management and reporting repository, RESTORE project (source)
  • Seagrass Transect Water Atlas Content
    • build Graphics, tables, and downloads for seagrass transect data (source)
  • TBERF Oyster Restoration Project
    • build Materials for evaluating TBERF oyster restoration success Figures (source)
  • Scallop Search
    • build Materials for evaluation and mapping of the Tampa Bay Watch Great Scallop Search Dashboard (source)
  • Verified WBIDs
    • build Materials for evaluation of verified WBIDs in the Tampa Bay watershed Dashboard (source).
  • Load Estimates
    • build Materials for creating a unified workflow to synthesize and report on load estimates to Tampa Bay. All estimates were obtained from Janicki Environmental. Dashboard (source).

Presentations

  • ANEP Tech Transfer Workshop

    • What is Open Science and Why Should the NEPs Care?, Oct. 29th, 2020 link
  • Bay-Delta IEP Data Science PWT

    • Bringing open science to Tampa Bay: Reproducible workflows & dynamic documents, Feb. 11th, 2021 link
  • Board meetings

    • Feb. 2020, 2019 water quality report card update: Management Board, Policy Board

    • Nov. 2021, Piney Point Manuscript Update: link

    • Feb. 2022, water quality report card and state of the bay update: link

  • EPA N-STEPS Webinar Oct 2022

    • Better nutrient management through open science: A collection of tales from California and Florida link
  • Habitat Restoration Consortium

    • May 2020, HMPU workflow, updating, and web products: Reproducible tools for tracking progress link
  • Joint Aquatic Sciences Meetings 2022

    • How the Tampa Bay Estuary Program Uses Open Science to Work Smarter, Not Harder, May 16th, 2022 link
  • NERRS Ecosystem Metabolism Webinar Aug 2020

    • Methods and tools to measure ecosystem metabolism link
  • NMC meetings

    • 2022 provisional water quality report card link

    • Hydrology and chlorophyll trends in Tampa Bay: Alternative modelling approaches link

  • Old Tampa Bay Working Group

    • Jun 2020, Seagrass changes in OTB: Recent shifts and links to water quality link
  • Open Science Subcommittee

    • Kickoff webinar, March 2nd, 2020 link

    • Water Quality Dashboard review summary, May 6th, 2020 link

    • OS updates, Oct 27th, 2020 link

    • OS updates, Feb 2nd, 2021 link

    • OS updates, May 4th, 2021 link

    • OS updates, Aug 3rd, 2021 link

    • OS updates, Feb 1st, 2022 link

    • OS updates, May 3rd, 2022 link

    • OS updates, Aug 2nd, 2022 link

    • OS updates, Nov 1st, 2022 link

  • Open Science Workshop Sep 2019

    • What is open science link

    • NERRS OS applications link

    • Evolution of open science for the water quality reporting tool link

    • Overcoming open science challenges link

  • PEP Monitoring Collaborative Oct 2020

    • Open source water quality reporting tools for the PEP Monitoring Collaborative link

    • Open source reporting tools for the PEP Monitoring Collaborative: beach pathogens and dissolved oxygen link

  • Piney Point

    • Piney Point Data and Analysis, June 15th, 2021 link

    • Coordinated Monitoring of the Piney Point Wastewater Discharge into Tampa Bay: Data Synthesis and Reporting, Nov. 10, 2021 (CERF 2021) link

  • SBEP TAC meeting Feb 2020

    • Open Science Data Discussion: Red Tide Impact and Response Assessment for Tampa and Sarasota Bay Region link
  • SWFL RAMP Meeting Jul 2020

    • Open Science at TBEP: Tidal Tributaries Example link
  • SWFL Seagrass Working Group

    • Tampa Bay Seagrass Changes: Exploring Trends from 2018 to 2020, Nov. 16, 2021 link
  • TAC meetings

    • Oct 2022, Revised Critical Coastal Habitat Assessment methodology link

    • Jun 2022, Macroalgae trends in Tampa Bay: What we do(n’t) know link

    • Jan 2022, RSPARROW Tools for End Users, Project Overview and Demo link

    • Mar 2021, Open Science Indicator Products: Seagrass transect data and dashboard link

    • Jun 2020, Tampa Bay Nekton Index: Open Science Integration link

    • Jan 2020, Open Science Indicator Products: Water Quality and Tidal Tributaries link

  • USF College of Marine Science

    • How you can do better science in less time: Open science lessons from the Ocean Health Index to Tampa Bay, March 5th, 2021 link
  • Virtual Summit Jul 2020

    • Bringing Open Science to Tampa Bay: Reproducible Workflows and Dynamic Documents link

Resources

 

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Contact mbeck@tbep.org with questions